OMA: MSA of HOG:E0792674.1b at Euteleosteomorpha

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0792674.1b with 36 members (neutrophil cytosolic factor)

Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata /

... /

Euteleostomi / Neopterygii / Teleostei / Clupeocephala /

Euteleosteomorpha /

Completeness score: 0.97

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Label

.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234.236.238.240.242.244.246.248.250.252.254.256.258.260.262.264.266.268.270.272.274.276.278.280.282.284.286.288.290.292.294.296.298.300.302.304.306.308.310.312.314.316.318.320.322.324.326.328.330.332.334.336.338.340.342.344.346.348.350.352.354.356.358.360.362.364.366.368.370.372.374.376.378.380.382.384.386.388.390.392.394.396.398.400.402.404.406.408.410.412.414.416.418.420.422.424.426.428.430.432.434.436.438.440.442.444.446.448.450.452.454.456.458.460.462.464.466.468.470.472.474.476.478.480.482.484.486.488.490.492.494.496.498.500.502.504.506.508.510.512.514.516.518.520.522.524.526.528.530.532.534.536.538.540.542.544.546.548.550.552.554.556.558.560.562.564.566.568.570.572.574.576.578.580.582.584.586.588.590.592.594.596.598.600

ANATE01887

SERDU16191

ECHNA38703

CYNSE21485

SCOMX18565

DICLA18520

GASAC02561

SPAAU46165

MOLML00221

TETNG19366

ORYJA26005

ORYLA08943

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NOTFU13223

KRYMA09754

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POEFO13571

POERE17214

XIPMA19789

SALFA02946

ASTCA40573

HAPBU27970

NEOBR26769

OREAU19150

ORENI73291

AMPCI13591

AMPOC04599

AMPPE20856

HIPCM26216

GADMO35777

ESOLU62502

SALSA60119

SALSA102162

SALTR00631

SALTR95742